Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs2283566 chr16:89827610 G/A 0.000179 176 25.87 20.17 36.37 KM Plot
PCPG rs2283567 chr16:89849977 A/C 3.05E-5 173 25.87 20.28 36.37 KM Plot
PCPG rs2286393 chr16:89809548 C/A 0.000223 172 25.87 20.2 36.37 KM Plot
PCPG rs2289959 chr2:136423904 C/T 0.00021 178 25.53 25.67 14.5 KM Plot
PCPG rs2290754 chr1:243806268 A/C 0.000271 172 25 27.33 18.35 KM Plot
PCPG rs2291361 chr12:56717805 G/A 1.01E-7 177 25.35 29.13 0.8 KM Plot
PCPG rs2293584 chr16:89888686 C/G 0.000192 173 25.87 21.5 36.37 KM Plot
PCPG rs2294445 chr16:1725105 T/C 1.52E-11 175 25.47 18.2 4.52 KM Plot
PCPG rs2294969 chr22:28492151 C/G 5.55E-16 175 25.87 20.33 6.4 KM Plot
PCPG rs2297703 chr1:111731158 C/T 0.000263 178 19.87 28.3 25.47 KM Plot
PCPG rs2301458 chr16:1665110 T/C 1.56E-11 173 25 31.2 4.52 KM Plot
PCPG rs2301901 chr7:158707071 A/G 0 175 25.82 21.9 3.17 KM Plot
PCPG rs2302162 chr16:89845287 A/G 0.000168 177 25.87 20.2 36.37 KM Plot
PCPG rs2303226 chr16:71604469 A/G 1.08E-5 174 25 30.93 14.5 KM Plot
PCPG rs230397 chr17:3275439 A/G 0.000438 170 18.2 25.43 27.2 KM Plot